API Reference

The following submodules provide the bulk of psico functionality. The API below is generated from the source using autodoc. Some modules may require optional dependencies; on this docs site, heavy dependencies are mocked so signatures and docstrings render without having those installed.

`psico.aaindex`	Python parser for AAindex: Amino Acid Index Database
`psico.aggrescanning`	Implementation of AGGRESCAN according to Conchillo-Solé et al. 2007 and the corresponding web tool at http://bioinf.uab.es/aap/.
`psico.conservation`
`psico.creating`
`psico.editing`
`psico.electrostatics`	Electrostatics (simple alternative to the APBS Tools Plugin)
`psico.exporting`	File export module that provides overloaded save commands with secondary structure and crystal information header, as well as saving to trajectory formats.
`psico.fasta`
`psico.fitting`
`psico.geometry`
`psico.orientation`	Orientation, displacement and angle measurments of helices and domains.
`psico.helping`
`psico.importing`
`psico.minimizing`
`psico.modelling`
`psico.moving`
`psico.msms`
`psico.nma`	Normal mode calculation using external apps or libraries.
`psico.plotting`	Plotting with matplotlib
`psico.querying`
`psico.selecting`
`psico.setting`
`psico.viewing`	Viewing and Coloring Stuff
`psico.wizards`	Interactive wizards
`psico.xtal`	Crystallographic symmetry related commands.
`psico.load_mtz_cctbx`