psico.fasta

3. 2012 Thomas Holder, MPI for Developmental Biology

License: BSD-2-Clause

Functions

fasta([selection, gapped, wrap, filename, ...])	Print sequence in FASTA format
pir([selection, wrap, _self])	Print sequence in PIR format
save_colored_fasta(filename[, selection, ...])	Save a html file with colored (by C-alpha atoms) fasta sequence.

psico.fasta.fasta(selection='(all)', gapped=1, wrap=70, filename='', quiet=1, *, _self=...)

Print sequence in FASTA format

Arguments

selection = string: atom selection {default: all}

gapped = integer: put missing residues as dashes into the sequence {default: 1}

wrap = integer: wrap lines, 0 for no wrapping {default: 70}

See Also

pir, pymol.exporting.get_fastastr

psico.fasta.pir(selection='(all)', wrap=70, *, _self=...)

Print sequence in PIR format

See Also

fasta

psico.fasta.save_colored_fasta(filename, selection='(all)', gapped=1, quiet=1, *, _self=...)

Save a html file with colored (by C-alpha atoms) fasta sequence.