psico.conservation

3. 2012 Thomas Holder

License: BSD-2-Clause

Functions

consurfdb(code[, chain, selection, palette, ...])	Color by evolutionary conservation.
load_consurf(filename, selection[, palette, ...])	Color by evolutionary conservation.

psico.conservation.consurfdb(code, chain='A', selection=None, palette='red_white_blue', quiet=1, *, _self=...)

Color by evolutionary conservation. Writes scores to b-factor.

Fetches pre-calculated conservation profile from ConSurf-DB. http://consurfdb.tau.ac.il/

Usage

consurfdb code [, chain [, selection [, palette ]]]

Example

fetch 1ubq, async=0 consurfdb 5nvg, A, 1ubq

See Also

load_consurf

psico.conservation.load_consurf(filename, selection, palette='red_white_blue', quiet=1, *, _self=...)

Color by evolutionary conservation. Writes scores to b-factor.

You need a “r4s.res” or “consurf.grades” input file.

Usage

load_consurf filename, selection [, palette ]

See Also

consurfdb